Fig. 2
From: T cell receptor beta germline variability is revealed by inference from repertoire data
Undocumented alleles. A Undocumented allele distribution in DS1 and DS2. The left panel shows undocumented alleles within the genotype. Each row represents an undocumented allele, and each column represents an individual. The Y-axis annotations in red, green, and blue correspond to alleles not following the expected multi-modal distribution, adjacent nucleotide stretches, or both, respectively. The tile colors correspond to an individual’s genotype. The right panel shows the fraction of the undocumented allele assignments out of the gene assignments. The X-axis is the fraction and the Y-axis is the same as in A. Colors correspond to an individual’s genotype of the allele. The shapes correspond to the number of gene assignments: a circle indicates that the number of gene assignments is less than 10, a triangle indicates that the number of gene assignments is between 10 and 30, and a square indicates that the number of gene assignments is more than 30. B Documented alleles versus the observed documented alleles and the undocumented alleles for each TRBV gene and in each data set, DS1 and DS2, DS3, and DS4, respectively. The X-axis corresponds to the TRBV genes and the Y-axis to the number of alleles. The color corresponds to the allele groups: dark red is the documented alleles, light red is the observed documented alleles, and blue is the observed undocumented alleles