Table 1 Identification of unique k-mers from viral assemblies
Unique 25-mers found among the SARS-CoV-23,968 genomes: 0 present, 1 = absent | AATGTATAGGGTCAGCACAAAAAAT | AGATAATAGATGGTAGAATGTAAAA | AGGGACTATTCCCACCCAAGAATAG | TAAGACTGTATGCGGTGTGTACATA | TCGTAACAATTAGTATGCCAGCAAA | TGCACCAAGTGACATAGTGTAGGCA | TTGGGTTCCACGTGCTAGCGCTAAC | TTTCACTGCACTTTGGAAAGTAACA |
|---|---|---|---|---|---|---|---|---|
England/EPI_ISL_420729 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 |
France/EPI_ISL_420038 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 |
Germany/EPI_ISL_419542 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 0 |
Netherlands/EPI_ISL_415482 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 1 |
Shanghai/EPI_ISL_416319 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 |
USA/EPI_ISL_413619 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
USA/EPI_ISL_420793 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 |
USA/EPI_ISL_417141 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 |
• | • | • | • | • | • | • | • | • |
3968 SARS-CoV-2 samples | 2 | 3968 | 3 | 3966 | 3958 | 3968 | 3960 | 3965 |
SARS-CoV-2100% conserved | No | Yes | No | No | No | Yes | No | No |
Human genome (GRCh38) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
42 influenza sequences | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
89 bacteria sequences | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
447 other human-host coronaviruses | 0 | 0 | 0 | 10 | 0 | 0 | 0 | 0 |
321 other human-host viruses | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
SARS-CoV-2 specific | Yes | Yes | No | No | Yes | Yes | Yes | No |