Fig. 1From: An integrative functional genomics framework for effective identification of novel regulatory variants in genome–phenome studiesDiagram of an integrative functional genomics workflow. SNPs from the PheWAS Catalog and GWAS Catalog were mapped to the whole human genome and non-coding SNPs were re-annotated with regulatory information. Protein-coding SNPs were re-annotated with protein functional information, including protein–ligand binding sites and phosphorylation sites. Based on gene regulatory annotations, we also performed a tissue-specific regulatory circuit analysis. All detailed data are provided in Additional files 1–5: Tables S1–S5Back to article page