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Table 1 List of 82 PD-associated CpGs in blood-based analyses with blood cell composition adjustment

From: Parkinson’s disease is associated with DNA methylation levels in human blood and saliva

 

CpG

Gene

Chr.

Position (bp)

Relation to UCSC CpG island

Gene region

SNPs

SNPs_10

cor

p value

1

cg02489202

LARS2

3

45505334

 

Body

  

−0.30

8.34E-11

2

cg04772575

ABCB9

12

123431865

 

Body

rs73408862

 

−0.28

4.33E-10

3

cg11334709

C1orf200

1

9716019

S_Shelf

TSS1500

  

−0.28

7.47E-10

4

cg17491368

 

1

211779938

    

−0.28

1.23E-09

5

cg16240816

 

2

65861662

  

rs80084148

 

0.28

1.25E-09

6

cg19879906

 

19

16392219

N_Shelf

   

−0.28

1.40E-09

7

cg08704934

C3orf21

3

194826585

 

Body

 

rs6799614

−0.27

2.64E-09

8

cg09993145

RUNX3

1

25291905

 

TSS1500

  

0.27

3.59E-09

9

cg01152726

LAMA3

18

21452844

 

TSS200

  

0.27

3.64E-09

10

cg09032544

CD247

1

167487295

 

Body

  

0.27

4.69E-09

11

cg10752406

AZU1

19

827776

 

TSS200

  

−0.27

4.96E-09

12

cg26341831

TMEM63A

1

226036279

 

Body

  

0.27

5.21E-09

13

cg01213231

ITGA5

12

54806218

 

Body

  

−0.26

6.99E-09

14

cg16643542

AZU1

19

827843

 

1stExon

rs34124897

 

−0.26

7.37E-09

15

cg21577598

CCDC57

17

80084751

N_Shore

Body

  

0.26

8.11E-09

16

cg26793227

EPHA2

1

16483658

S_Shore

TSS1500

rs57602506

 

−0.26

8.17E-09

17

cg16270399

LOC284276

18

74257894

 

Body

  

−0.26

8.95E-09

18

cg22358291

WDR1

4

10101553

 

Body

  

0.26

1.38E-08

19

cg26681770

PMEPA1

20

56247302

Island

5′UTR

rs36008751

 

−0.26

1.40E-08

20

cg01657758

SORL1

11

121349740

 

Body

  

−0.26

1.46E-08

21

cg24168413

FXYD1

19

35630388

N_Shore

5′UTR

rs77395635

 

−0.26

1.53E-08

22

cg26474124

 

2

70368457

N_Shore

 

rs11685382

 

−0.26

1.66E-08

23

cg12792363

LGALS12

11

63274030

 

Body

  

−0.26

1.79E-08

24

cg12500949

 

2

88357920

S_Shelf

   

0.26

1.81E-08

25

cg16580197

 

8

67841925

S_Shelf

   

−0.26

2.20E-08

26

cg19709355

RARA

17

38504102

S_Shelf

Body

  

−0.26

2.27E-08

27

cg24339704

GNG7

19

2529022

S_Shelf

5′UTR

rs740054

 

−0.26

2.32E-08

28

cg02600394

TXK

4

48136234

 

5′UTR

  

0.26

2.44E-08

29

cg23207054

CSF3

17

38171530

 

TSS200

  

−0.25

2.79E-08

30

cg14659511

DOCK9

13

99668433

 

Body

  

0.25

2.96E-08

31

cg19081101

CHI3L1

1

203156625

 

TSS1500

  

−0.25

3.05E-08

32

cg20357538

CHSY1

15

101777761

 

Body

 

rs11855006

−0.25

3.31E-08

33

cg26279840

IKBKG

X

153770418

 

TSS200

  

−0.25

3.35E-08

34

cg17879101

FAM53B

10

126329354

 

Body

  

−0.25

3.37E-08

35

cg27640064

FOXK1

7

4752983

 

Body

 

rs77026339

−0.25

3.50E-08

36

cg02505177

MGEA5

10

103574626

N_Shelf

Body

  

0.25

3.55E-08

37

cg23189692

EIF4G1

3

184050393

N_Shelf

Body

  

−0.25

3.83E-08

38

cg15209885

CBX2

17

77753199

S_Shore

Body

rs72231015

 

−0.25

3.89E-08

39

cg19011001

ITPK1

14

93539613

 

Body

  

−0.25

3.97E-08

40

cg17984638

TXK

4

48136452

 

TSS200

  

0.25

4.02E-08

41

cg17173442

RFXANK

19

19305340

S_Shore

Body

  

−0.25

4.10E-08

42

cg26489413

AMPD3

11

10476976

 

1stExon

  

−0.25

4.15E-08

43

cg20720686

POR

7

75582881

 

5′UTR

rs41295375

 

−0.25

4.16E-08

44

cg08069287

 

11

72868833

    

−0.25

4.42E-08

45

cg26963632

 

16

85558148

    

−0.25

4.49E-08

46

cg14023999

 

15

90543224

N_Shore

   

−0.25

4.68E-08

47

cg02861056

PLEK

2

68592345

 

1stExon

  

−0.25

4.86E-08

48

cg24185397

 

17

25659609

N_Shore

   

−0.25

4.90E-08

49

cg13060970

PLEK

2

68592349

 

1stExon

  

−0.25

4.93E-08

50

cg21252105

 

9

139459307

    

−0.25

5.07E-08

51

cg01752594

DLEU2

13

50696070

N_Shore

Body

  

−0.25

5.09E-08

52

cg14642045

UNG

12

109538736

S_Shelf

Body

rs3219221

 

−0.25

5.17E-08

53

cg08400494

CARS2

13

111318490

 

Body

  

−0.25

5.34E-08

54

cg09298313

 

14

55569959

    

−0.25

5.36E-08

55

cg15961455

 

1

23590501

    

−0.25

5.38E-08

56

cg16000989

DCAF4L1

4

41983716

N_Shore

5′UTR

  

−0.25

5.54E-08

57

cg14001486

PRKCH

14

61801201

 

Body

  

0.25

5.92E-08

58

cg12810837

CLEC2D

12

9822287

 

TSS200

  

0.25

5.93E-08

59

cg04182865

RNF14

5

141346431

N_Shelf

TSS200

  

−0.25

5.99E-08

60

cg14004161

SNX22

15

64442561

N_Shore

TSS1500

  

−0.25

6.84E-08

61

cg27553947

CLSTN1

1

9819767

N_Shelf

Body

 

rs76639688

−0.25

7.17E-08

62

cg05163268

 

5

180116385

  

rs11738824

 

0.25

7.20E-08

63

cg25416125

DGKA

12

56329615

Island

5′UTR

  

0.25

7.38E-08

64

cg21815704

GLRX2

1

193075249

S_Shore

TSS1500

  

−0.25

7.41E-08

65

cg07196571

SNX22

15

64442578

N_Shore

TSS1500

  

−0.25

7.46E-08

66

cg12007048

CTSD

11

1785701

S_Shore

TSS1500

  

−0.25

7.47E-08

67

cg01554529

FBXO6

1

11722935

N_Shore

TSS1500

  

−0.25

7.51E-08

68

cg27466532

RAPSN

11

47471400

 

TSS1500

  

−0.25

7.96E-08

69

cg16971827

CBL

11

119177430

N_Shelf

3′UTR

  

0.25

8.20E-08

70

cg18463607

EXOC1

4

56718320

N_Shore

TSS1500

  

0.25

8.54E-08

71

cg13879047

GRB10

7

50774217

 

5′UTR

  

−0.25

8.62E-08

72

cg19743406

LHFPL5

6

35771838

N_Shore

TSS1500

 

rs59697285

−0.25

8.66E-08

73

cg08930843

ZNF438

10

31182298

 

5′UTR

  

−0.25

8.76E-08

74

cg13451886

SLFN5

17

33568791

N_Shore

TSS1500

  

0.24

8.89E-08

75

cg21495704

TYROBP

19

36399346

 

TSS200

rs56006731

−0.24

9.02E-08

76

cg09674502

GFI1

1

92953279

S_Shore

TSS1500

  

−0.24

9.27E-08

77

cg27073431

CALM2

2

47404636

S_Shore

TSS1500

  

−0.24

9.33E-08

78

cg21159128

SSBP3

1

54693933

 

Body

  

−0.24

9.47E-08

79

cg04252203

 

3

194696866

    

−0.24

9.62E-08

80

cg13443575

SLFN13

17

33775961

N_Shore

TSS200

  

−0.24

9.72E-08

81

cg05001044

MIR1977

1

567312

 

TSS1500

  

−0.24

9.74E-08

82

cg13716760

 

9

15371248

    

−0.24

9.95E-08

  1. These are CpGs with p values < 10–7 for blood DNA methylation analyses in 508 PEG1 individuals of European ancestry adjusting for age and gender
  2. Chr Chromosome, bp base pair, TSS transcription start site, TSS1500 within 1500 bps of a TSS, TSS200 within 200 bps of a TSS, UTR untranslated region, SNPs listing dbSNP entries within a probe, SNPs_10 listing dbSNP entries within 10 bp of the CpG site