From: Parkinson’s disease is associated with DNA methylation levels in human blood and saliva
CpG | Gene | Chr. | Position (bp) | Relation to UCSC CpG island | Gene region | SNPs | SNPs_10 | cor | p value | |
---|---|---|---|---|---|---|---|---|---|---|
1 | cg02489202 | LARS2 | 3 | 45505334 | Body | −0.30 | 8.34E-11 | |||
2 | cg04772575 | ABCB9 | 12 | 123431865 | Body | rs73408862 | −0.28 | 4.33E-10 | ||
3 | cg11334709 | C1orf200 | 1 | 9716019 | S_Shelf | TSS1500 | −0.28 | 7.47E-10 | ||
4 | cg17491368 | 1 | 211779938 | −0.28 | 1.23E-09 | |||||
5 | cg16240816 | 2 | 65861662 | rs80084148 | 0.28 | 1.25E-09 | ||||
6 | cg19879906 | 19 | 16392219 | N_Shelf | −0.28 | 1.40E-09 | ||||
7 | cg08704934 | C3orf21 | 3 | 194826585 | Body | rs6799614 | −0.27 | 2.64E-09 | ||
8 | cg09993145 | RUNX3 | 1 | 25291905 | TSS1500 | 0.27 | 3.59E-09 | |||
9 | cg01152726 | LAMA3 | 18 | 21452844 | TSS200 | 0.27 | 3.64E-09 | |||
10 | cg09032544 | CD247 | 1 | 167487295 | Body | 0.27 | 4.69E-09 | |||
11 | cg10752406 | AZU1 | 19 | 827776 | TSS200 | −0.27 | 4.96E-09 | |||
12 | cg26341831 | TMEM63A | 1 | 226036279 | Body | 0.27 | 5.21E-09 | |||
13 | cg01213231 | ITGA5 | 12 | 54806218 | Body | −0.26 | 6.99E-09 | |||
14 | cg16643542 | AZU1 | 19 | 827843 | 1stExon | rs34124897 | −0.26 | 7.37E-09 | ||
15 | cg21577598 | CCDC57 | 17 | 80084751 | N_Shore | Body | 0.26 | 8.11E-09 | ||
16 | cg26793227 | EPHA2 | 1 | 16483658 | S_Shore | TSS1500 | rs57602506 | −0.26 | 8.17E-09 | |
17 | cg16270399 | LOC284276 | 18 | 74257894 | Body | −0.26 | 8.95E-09 | |||
18 | cg22358291 | WDR1 | 4 | 10101553 | Body | 0.26 | 1.38E-08 | |||
19 | cg26681770 | PMEPA1 | 20 | 56247302 | Island | 5′UTR | rs36008751 | −0.26 | 1.40E-08 | |
20 | cg01657758 | SORL1 | 11 | 121349740 | Body | −0.26 | 1.46E-08 | |||
21 | cg24168413 | FXYD1 | 19 | 35630388 | N_Shore | 5′UTR | rs77395635 | −0.26 | 1.53E-08 | |
22 | cg26474124 | 2 | 70368457 | N_Shore | rs11685382 | −0.26 | 1.66E-08 | |||
23 | cg12792363 | LGALS12 | 11 | 63274030 | Body | −0.26 | 1.79E-08 | |||
24 | cg12500949 | 2 | 88357920 | S_Shelf | 0.26 | 1.81E-08 | ||||
25 | cg16580197 | 8 | 67841925 | S_Shelf | −0.26 | 2.20E-08 | ||||
26 | cg19709355 | RARA | 17 | 38504102 | S_Shelf | Body | −0.26 | 2.27E-08 | ||
27 | cg24339704 | GNG7 | 19 | 2529022 | S_Shelf | 5′UTR | rs740054 | −0.26 | 2.32E-08 | |
28 | cg02600394 | TXK | 4 | 48136234 | 5′UTR | 0.26 | 2.44E-08 | |||
29 | cg23207054 | CSF3 | 17 | 38171530 | TSS200 | −0.25 | 2.79E-08 | |||
30 | cg14659511 | DOCK9 | 13 | 99668433 | Body | 0.25 | 2.96E-08 | |||
31 | cg19081101 | CHI3L1 | 1 | 203156625 | TSS1500 | −0.25 | 3.05E-08 | |||
32 | cg20357538 | CHSY1 | 15 | 101777761 | Body | rs11855006 | −0.25 | 3.31E-08 | ||
33 | cg26279840 | IKBKG | X | 153770418 | TSS200 | −0.25 | 3.35E-08 | |||
34 | cg17879101 | FAM53B | 10 | 126329354 | Body | −0.25 | 3.37E-08 | |||
35 | cg27640064 | FOXK1 | 7 | 4752983 | Body | rs77026339 | −0.25 | 3.50E-08 | ||
36 | cg02505177 | MGEA5 | 10 | 103574626 | N_Shelf | Body | 0.25 | 3.55E-08 | ||
37 | cg23189692 | EIF4G1 | 3 | 184050393 | N_Shelf | Body | −0.25 | 3.83E-08 | ||
38 | cg15209885 | CBX2 | 17 | 77753199 | S_Shore | Body | rs72231015 | −0.25 | 3.89E-08 | |
39 | cg19011001 | ITPK1 | 14 | 93539613 | Body | −0.25 | 3.97E-08 | |||
40 | cg17984638 | TXK | 4 | 48136452 | TSS200 | 0.25 | 4.02E-08 | |||
41 | cg17173442 | RFXANK | 19 | 19305340 | S_Shore | Body | −0.25 | 4.10E-08 | ||
42 | cg26489413 | AMPD3 | 11 | 10476976 | 1stExon | −0.25 | 4.15E-08 | |||
43 | cg20720686 | POR | 7 | 75582881 | 5′UTR | rs41295375 | −0.25 | 4.16E-08 | ||
44 | cg08069287 | 11 | 72868833 | −0.25 | 4.42E-08 | |||||
45 | cg26963632 | 16 | 85558148 | −0.25 | 4.49E-08 | |||||
46 | cg14023999 | 15 | 90543224 | N_Shore | −0.25 | 4.68E-08 | ||||
47 | cg02861056 | PLEK | 2 | 68592345 | 1stExon | −0.25 | 4.86E-08 | |||
48 | cg24185397 | 17 | 25659609 | N_Shore | −0.25 | 4.90E-08 | ||||
49 | cg13060970 | PLEK | 2 | 68592349 | 1stExon | −0.25 | 4.93E-08 | |||
50 | cg21252105 | 9 | 139459307 | −0.25 | 5.07E-08 | |||||
51 | cg01752594 | DLEU2 | 13 | 50696070 | N_Shore | Body | −0.25 | 5.09E-08 | ||
52 | cg14642045 | UNG | 12 | 109538736 | S_Shelf | Body | rs3219221 | −0.25 | 5.17E-08 | |
53 | cg08400494 | CARS2 | 13 | 111318490 | Body | −0.25 | 5.34E-08 | |||
54 | cg09298313 | 14 | 55569959 | −0.25 | 5.36E-08 | |||||
55 | cg15961455 | 1 | 23590501 | −0.25 | 5.38E-08 | |||||
56 | cg16000989 | DCAF4L1 | 4 | 41983716 | N_Shore | 5′UTR | −0.25 | 5.54E-08 | ||
57 | cg14001486 | PRKCH | 14 | 61801201 | Body | 0.25 | 5.92E-08 | |||
58 | cg12810837 | CLEC2D | 12 | 9822287 | TSS200 | 0.25 | 5.93E-08 | |||
59 | cg04182865 | RNF14 | 5 | 141346431 | N_Shelf | TSS200 | −0.25 | 5.99E-08 | ||
60 | cg14004161 | SNX22 | 15 | 64442561 | N_Shore | TSS1500 | −0.25 | 6.84E-08 | ||
61 | cg27553947 | CLSTN1 | 1 | 9819767 | N_Shelf | Body | rs76639688 | −0.25 | 7.17E-08 | |
62 | cg05163268 | 5 | 180116385 | rs11738824 | 0.25 | 7.20E-08 | ||||
63 | cg25416125 | DGKA | 12 | 56329615 | Island | 5′UTR | 0.25 | 7.38E-08 | ||
64 | cg21815704 | GLRX2 | 1 | 193075249 | S_Shore | TSS1500 | −0.25 | 7.41E-08 | ||
65 | cg07196571 | SNX22 | 15 | 64442578 | N_Shore | TSS1500 | −0.25 | 7.46E-08 | ||
66 | cg12007048 | CTSD | 11 | 1785701 | S_Shore | TSS1500 | −0.25 | 7.47E-08 | ||
67 | cg01554529 | FBXO6 | 1 | 11722935 | N_Shore | TSS1500 | −0.25 | 7.51E-08 | ||
68 | cg27466532 | RAPSN | 11 | 47471400 | TSS1500 | −0.25 | 7.96E-08 | |||
69 | cg16971827 | CBL | 11 | 119177430 | N_Shelf | 3′UTR | 0.25 | 8.20E-08 | ||
70 | cg18463607 | EXOC1 | 4 | 56718320 | N_Shore | TSS1500 | 0.25 | 8.54E-08 | ||
71 | cg13879047 | GRB10 | 7 | 50774217 | 5′UTR | −0.25 | 8.62E-08 | |||
72 | cg19743406 | LHFPL5 | 6 | 35771838 | N_Shore | TSS1500 | rs59697285 | −0.25 | 8.66E-08 | |
73 | cg08930843 | ZNF438 | 10 | 31182298 | 5′UTR | −0.25 | 8.76E-08 | |||
74 | cg13451886 | SLFN5 | 17 | 33568791 | N_Shore | TSS1500 | 0.24 | 8.89E-08 | ||
75 | cg21495704 | TYROBP | 19 | 36399346 | TSS200 | rs56006731 | −0.24 | 9.02E-08 | ||
76 | cg09674502 | GFI1 | 1 | 92953279 | S_Shore | TSS1500 | −0.24 | 9.27E-08 | ||
77 | cg27073431 | CALM2 | 2 | 47404636 | S_Shore | TSS1500 | −0.24 | 9.33E-08 | ||
78 | cg21159128 | SSBP3 | 1 | 54693933 | Body | −0.24 | 9.47E-08 | |||
79 | cg04252203 | 3 | 194696866 | −0.24 | 9.62E-08 | |||||
80 | cg13443575 | SLFN13 | 17 | 33775961 | N_Shore | TSS200 | −0.24 | 9.72E-08 | ||
81 | cg05001044 | MIR1977 | 1 | 567312 | TSS1500 | −0.24 | 9.74E-08 | |||
82 | cg13716760 | 9 | 15371248 | −0.24 | 9.95E-08 |