Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases

Table 1 SV phasing results for SVs in the right metastasis in the region surrounding FGFR2

SV ID	SV breakpoints	Number of unique molecules in breakpoint window	SV breakpoint-spanning molecules	Somatic phase block coordinates	Number of molecules assigned to haplotype	Molecule support for haplotype assignment
SV ID	SV breakpoints	Number of unique molecules in breakpoint window	SV breakpoint-spanning molecules	Somatic phase block coordinates	Number of molecules assigned to haplotype	Hap1	Hap2
DUP	92790689	1315	119	91045792 – 95201175 + 122189628 – 125868860	92	92 / 92 (1.0)	0 / 92 (0)
DUP	123553942	1287	119		92	92 / 92 (1.0)	0 / 92 (0)
DEL	93321593	1474	158		80	80 / 80 (1.0)	0 / 80 (0)
DEL	122582235	1582	158		80	80 / 80 (1.0)	0 / 80 (0)
INV	122756078	2081	313		201	200 / 201 (0.99)	1 / 201 (0.01)
INV	123240170	2486	313		201	200 / 201 (0.99)	1 / 201 (0.01)

ISSN: 1756-994X