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Table 2 Sample means (standard deviations in parentheses) of the total number of selected OTUs (Total), and of the numbers of true positives and false positives

From: An adaptive association test for microbiome data

 

Method

Total

TP

FP

X ⊥ ⊥Z

fitZig

157.0 (49.4)

12.3 (4.7)

144.6 (45.7)

 

DESeq2

20.4 (4.8)

3.4 (1.5)

17.0 (4.4)

 

KW

25.8 (6.1)

3.5 (1.6)

22.3 (5.7)

 

aMiSPU with α 1=.7

234.1 (241.5)

42.6 (18.5)

191.6 (234.8)

 

aMiSPU with k 1=1

58.5 (76.9)

27.2 (20.6)

31.3 (78.1)

  1. Based on 1000 simulation replications under scenario 1, by fitZig [32], DESeq2 [31], KW test, aMiSPU with α 1=.7, or aMiSPU with k 1=1. For fitZig, DESeq2 and KW test, cutoff 5×10−5, 0.05, 0.05 were chosen, respectively
  2. FP number of false positives, KW Kruskal–Wallis test, OTU operational taxonomic unit, TP number of true positives