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Table 2 Characteristics of curated ovarian cancer datasets

From: CoINcIDE: A framework for discovery of patient subtypes across multiple datasets

Dataset

ID

Batch ID

GEO platform ID

Commercial platform name

Samples (n)

Genes (n)

1

E.MTAB.386

 

GPL6104

Illumina HumanRef-8 V2

129

10,560

2

GSE12470

 

GPL887

Agilent G4110b

53

18,940

3

GSE13876

 

GPL15718

Operon Human v3

157

20,822

4

GSE14764

 

GPL96

Affy U133a

80

13,769

5

GSE17260

 

GPL6480

Agilent G4112f

110

20,867

6

GSE18520

 

GPL570

Affy U133 Plus 2.0

63

20,440

7

GSE19829

GPL570

GPL570

Affy U133 Plus 2.0

28

20,440

8

GSE19829

GPL8300

GPL8300

Affy U95 v2

42

9,674

9

GSE20565

 

GPL570

Affy U133 Plus 2.0

140

20,440

10

GSE2109

 

GPL570

Affy U133 Plus 2.0

204

20,440

11

GSE26193

 

GPL570

Affy U133 Plus 2.0

107

20,440

12

GSE26712

 

GPL96

Affy U133a

195

13,769

13

GSE30161

 

GPL570

Affy U133 Plus 2.0

58

20,440

14

GSE32062

 

GPL6480

Agilent G4112f

260

20,867

15

GSE32063

 

GPL6480

Agilent G4112f

40

20,867

16

GSE44104

 

GPL570

Affy U133 Plus 2.0

60

20,440

17

GSE49997

 

GPL2986

ABI Human Genome Survey V2

204

16,048

18

GSE6008

 

GPL96

Affy U133a

172

8,744

19

GSE6822

 

GPL80

Affy Hu6800

66

5,251

20

GSE9891

 

GPL570

Affy U133 Plus 2.0

285

20,440

21

PMID15897565

 

GPL96

Affy U133a

63

13,769

22

PMID17290060

 

GPL96

Affy U133a

117

13,769

23

PMID19318476

 

GPL96

Affy U133a

42

13,769

24

TCGA

 

GPL3291

Affy HT U133a

578

13,769

  1. Datasets were collected from several repositories, including GEO. GSE = GEO series ID prefix; this prefix is only included for datasets taken directly from GEO