From: CoINcIDE: A framework for discovery of patient subtypes across multiple datasets
Dataset | ID | Batch ID | GEO platform ID | Commercial platform name | Samples (n) | Genes (n) |
---|---|---|---|---|---|---|
1 | E.MTAB.386 | Â | GPL6104 | Illumina HumanRef-8Â V2 | 129 | 10,560 |
2 | GSE12470 | Â | GPL887 | Agilent G4110b | 53 | 18,940 |
3 | GSE13876 | Â | GPL15718 | Operon Human v3 | 157 | 20,822 |
4 | GSE14764 | Â | GPL96 | Affy U133a | 80 | 13,769 |
5 | GSE17260 | Â | GPL6480 | Agilent G4112f | 110 | 20,867 |
6 | GSE18520 | Â | GPL570 | Affy U133 Plus 2.0 | 63 | 20,440 |
7 | GSE19829 | GPL570 | GPL570 | Affy U133 Plus 2.0 | 28 | 20,440 |
8 | GSE19829 | GPL8300 | GPL8300 | Affy U95 v2 | 42 | 9,674 |
9 | GSE20565 | Â | GPL570 | Affy U133 Plus 2.0 | 140 | 20,440 |
10 | GSE2109 | Â | GPL570 | Affy U133 Plus 2.0 | 204 | 20,440 |
11 | GSE26193 | Â | GPL570 | Affy U133 Plus 2.0 | 107 | 20,440 |
12 | GSE26712 | Â | GPL96 | Affy U133a | 195 | 13,769 |
13 | GSE30161 | Â | GPL570 | Affy U133 Plus 2.0 | 58 | 20,440 |
14 | GSE32062 | Â | GPL6480 | Agilent G4112f | 260 | 20,867 |
15 | GSE32063 | Â | GPL6480 | Agilent G4112f | 40 | 20,867 |
16 | GSE44104 | Â | GPL570 | Affy U133 Plus 2.0 | 60 | 20,440 |
17 | GSE49997 | Â | GPL2986 | ABI Human Genome Survey V2 | 204 | 16,048 |
18 | GSE6008 | Â | GPL96 | Affy U133a | 172 | 8,744 |
19 | GSE6822 | Â | GPL80 | Affy Hu6800 | 66 | 5,251 |
20 | GSE9891 | Â | GPL570 | Affy U133 Plus 2.0 | 285 | 20,440 |
21 | PMID15897565 | Â | GPL96 | Affy U133a | 63 | 13,769 |
22 | PMID17290060 | Â | GPL96 | Affy U133a | 117 | 13,769 |
23 | PMID19318476 | Â | GPL96 | Affy U133a | 42 | 13,769 |
24 | TCGA | Â | GPL3291 | Affy HT U133a | 578 | 13,769 |