Data set 1 | Gene | Mutation | Tissue | Mean coverage | PCR/CE | ScanIndel | GATK | Pindel | Scalpel | Platypus | FermiKit | Delly |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1-1 | CALR | DEL | BM | 46,913 | 52 | 52 | 52 | NC | NC | NC | NC | NC |
1-2 | EGFR | DEL | FFPE | 25,821 | 18 | 18 | 18 | NC | NC | 18 | NC | NC |
1-3 | KIT | DEL | FFPE | 12,990 | 6 | 6 | 6 | NC | NC | 6 | NC | NC |
1-4 | NPM1 | INS | BM | 21,387 | 4 | 4 | 4 | 4 | NC | NC | NC | NC |
1-5 | FLT3 | INS | BM | 4768 | 21 | 21 | 21 | 21 | NC | NC | NC | NC |
1-6 | FLT3 | INS | BM | 11,510 | 26 | 27 | NC | 27 | NC | NC | NC | NC |
1-7 | FLT3 | INS | BM | 26,747 | 49 | 51 | NC | 51 | NC | NC | NC | NC |
1-8 | FLT3 | INS | BM | 28,991 | 38 | 39 | NC | 39 | NC | NC | NC | NC |
1-9 | FLT3 | INS | BM | 26,734 | 90 | 93 | NC | 93 | NC | NC | 93 | NC |
1-10 | FLT3 | INS | BM | 16,152 | 75 | 78 | NC | 78 | NC | NC | NC | NC |
1-11 | FLT3 | INS | BM | 3528 | 32 | 33 | 33 | 33 | NC | NC | NC | NC |
1-12 | FLT3 | INS | BM | 3851 | 51 | 54 | 54 | 54 | NC | NC | NC | NC |
1-13 | FLT3 | INS | BM | 21,403 | 23 | 24 | 24 | 24 | NC | NC | NC | NC |
1-14 | FLT3 | INS | BM | 3070 | 45 | 48 | 48 | 48 | NC | NC | NC | NC |
1-15 | FLT3 | INS | BM | 4506 | 33 | 36 | 36 | 36 | NC | NC | NC | NC |
1-16 | FLT3 | NEG | BM | 4471 | NC | NC | NC | NC | NC | NC | NC | NC |
1-17 | FLT3 | NEG | BM | 4321 | NC | NC | NC | NC | NC | NC | NC | NC |
1-18 | FLT3 | NEG | BM | 6219 | NC | NC | NC | NC | NC | NC | NC | NC |
1-19 | FLT3 | NEG | BM | 5259 | NC | NC | NC | NC | NC | NC | NC | NC |
1-20 | FLT3 | NEG | BM | 4443 | NC | NC | NC | NC | NC | NC | NC | NC |
1-21 | FLT3 | NEG | BM | 5236 | NC | NC | NC | NC | NC | NC | NC | NC |
1-22 | FLT3 | NEG | BM | 4443 | NC | NC | NC | NC | NC | NC | NC | NC |