From: HLAreporter: a tool for HLA typing from next generation sequencing data
Quality standard (QS) a | HLA gene | Total number of genes | Number of QS passes a | Pass QS (%) a | Four-digit (%) b | Two-digit (%) b |
---|---|---|---|---|---|---|
10 × = 100% and 20× ≥98% | HLA-A | 51 | 3 | 6% | 100% | 100% |
 | HLA-B | 51 | 7 | 14% | 100% | 100% |
 | HLA-C | 51 | 4 | 8% | 100% | 100% |
 | HLA-DRB1 | 46 | 28 | 61% | 100% | 100% |
 | HLA-DQB1 | 51 | 20 | 39% | 100% | 100% |
 | HLA-DQA1 | 51 | 20 | 39% | 100% | 100% |
10 × = 100% and 20× ≥90% | HLA-A | 51 | 18 | 35% | 81% | 100% |
 | HLA-B | 51 | 18 | 35% | 83% | 100% |
 | HLA-C | 51 | 11 | 22% | 100% | 100% |
 | HLA-DRB1 | 46 | 40 | 87% | 99% | 100% |
 | HLA-DQB1 | 51 | 27 | 53% | 100% | 100% |
 | HLA-DQA1 | 51 | 35 | 69% | 100% | 100% |
10× ≥95% | HLA-DRB1 | 46 | 45 | 98% | 96% | 98% |
 | HLA-DQB1 | 51 | 46 | 90% | 91% | 99% |
 | HLA-DQA1 | 51 | 43 | 84% | 100% | 100% |