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Table 2 SNPs found in the Corynebacterium ulcerans isolates

From: Next generation sequencing analysis of nine Corynebacterium ulcerans isolates reveals zoonotic transmission and a novel putative diphtheria toxin-encoding pathogenicity island

 

08-1143

KL126

KL246

KL251

KL252

KL315

KL318

KL387

KL392

FRC58

102

BR-AD22

08-1143

0

2(35)

7,293

7,304

7,300

21,271

21,258

7,330

7,337

7,585

20,538

17,757

KL126

2 (35)

0

7,291

7,290

7,290

21,263

21,256

7,323

7,326

7,579

20,536

17,758

KL246

7,293

7,291

0

0 (46)

1 (32)

17,269

17,256

5,239

5,254

9,285

16,773

16,619

KL251

7,304

7,290

0 (46)

0

1 (51)

17,281

17,266

5,259

5,270

9,294

16,784

16,635

KL252

7,300

7,290

1 (32)

1 (51)

0

17,267

17,254

5,222

5,245

9,270

16,763

16,608

KL315

21,271

21,263

17,269

17,281

17,267

0

0 (96)

16,602

16,608

16,603

1,297

12,670

KL318

21,258

21,256

17,256

17,266

17,254

0 (96)

0

16,591

16,589

16,585

1,280

12,659

KL387

7,330

7,323

5,239

5,259

5,222

16,602

16,591

0

2 (37)

9,521

16,079

16,034

KL392

7,337

7,326

5,254

5,270

5,245

16,608

16,589

2 (37)

0

9,550

16,087

16,050

FRC58

7,585

7,579

9,285

9,294

9,270

16,603

16,585

9,521

9,550

0

16,316

16,166

102

20,538

20,536

16,773

16,784

16,763

1,297

1,280

16,079

16,087

16,316

0

12,122

BR-AD22

17,757

17,758

16,619

16,635

16,608

12,670

12,659

16,034

16,050

16,166

12,122

0

  1. SNPs of the resequenced isolates show that only very minor differences are detectable within each group of isolates. Numbers in parentheses represent the number of SNPs originally given by the SNP calling pipeline. The number in front is the number of SNPs remaining after manual curation as described in the Methods section to avoid faulty SNP calling.