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Table 2 Percent of single CpGs that result in a q value <0.05 and effect size >0.10 when comparing cancer to normal samples with a t-test

From: Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors

 

Colon

Lung

Pancreas NET

Pancreas ACA

Thyroid

Breast

OpenSea-hypo

26

9.9

6.3

10

1.5

1.2

Shelf-hypo

22

8.7

5.6

7.6

1.5

1

Shore-hypo

13

6.2

3.7

7.5

0.94

1.1

Island-hypo

2.9

1.4

1.8

3

0.15

0.3

OpenSea-hyper

2

3.5

2.2

12

1.4

3.7

Shelf-hyper

2.1

2.5

2.3

11

0.87

2.7

Shore-hyper

8.2

4.7

2.4

14

1.5

4

Island-hyper

15

6.5

0.62

11

1.2

5