Table 2 Number of validated true/false sSNVs detected using the five tools in a melanoma sample
From: Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers
Tool | All sSNVs | High confidence sSNVs | ||
|---|---|---|---|---|
# TP | # FP | # TP | # FP | |
JointSNVMix | 119 | 2 | 108 | 0 |
MuTect | 119 | 9 | 115 | 0 |
SomaticSniper | 116 | 4 | 104 | 0 |
Strelka | 117 | 0 | 113 | 0 |
Varscan 2 | 119 | 6 | 118 | 2 |