From: A SNP profiling panel for sample tracking in whole-exome sequencing studies
Chromosome | Positiona | dbSNP rsID | Gene | Alleles | HapMap 3 AF | |||
---|---|---|---|---|---|---|---|---|
 |  |  |  |  | CEU | CHB | JPT | YRI |
1 | 179520506 | rs1410592 | NPHS2 | A/C | 0.59 | 0.62 | 0.54 | 0.53 |
1 | 67861520 | rs2229546 | IL12RB2 | A/G | 0.64 | 0.36 | 0.44 | 0.58 |
2 | 169789016 | rs497692 | ABCB11 | A/Gb | 0.55 | 0.65 | 0.51 | 0.22 |
2 | 227896976 | rs10203363 | COL4A4 | C/T | 0.46 | 0.44 | 0.36 | 0.57 |
3 | 4403767 | rs2819561 | SUMF1 | A/Gb | 0.56 | 0.73 | 0.73 | 0.72 |
4 | 5749904 | rs4688963 | EVC | A/Gb | 0.33 | 0.65 | 0.67 | 0.52 |
5 | 82834630 | rs309557 | VCAN | A/Gb | 0.49 | 0.34 | 0.52 | 0.50 |
6 | 146755140 | rs2942 | GRM1 | C/T | 0.54 | 0.49 | 0.55 | 0.47 |
7 | 48450157 | rs17548783 | ABCA13 | C/T | 0.46 | 0.72 | 0.53 | 0.48 |
8 | 94935937 | rs4735258 | PDP1 | C/T | 0.40 | 0.64 | 0.66 | 0.46 |
9 | 100190780 | rs1381532 | TDRD7 | A/Gb | 0.48 | 0.59 | 0.50 | 0.58 |
10 | 100219314 | rs10883099 | HPSE2 | A/G | 0.52 | 0.52 | 0.53 | 0.62 |
11 | 16133413 | rs4617548 | SOX6 | C/T | 0.52 | 0.65 | 0.61 | 0.51 |
12 | 993930 | rs7300444 | WNK1 | A/G | 0.46 | 0.55 | 0.48 | 0.28 |
13 | 39433606 | rs9532292 | FREM2 | A/G | 0.29 | 0.41 | 0.44 | 0.54 |
14 | 50769717 | rs2297995 | L2HGDH | A/G | 0.55 | 0.65 | 0.67 | 0.59 |
15 | 34528948 | rs4577050 | SLC12A6 | C/T | 0.68 | 0.75 | 0.63 | 0.32 |
16 | 70303580 | rs2070203 | AARS | A/Gb | 0.53 | 0.28 | 0.51 | 0.49 |
17 | 71197748 | rs1037256 | COG1 | C/T | 0.50 | 0.67 | 0.65 | 0.56 |
18 | 21413869 | rs9962023 | LAMA3 | A/G | 0.67 | 0.81c | 0.75 | 0.51 |
19 | 10267077 | rs2228611 | DNMT1 | C/Tb | 0.47 | 0.73 | 0.56 | 0.48 |
20 | 6100088 | rs10373 | FERMT1 | G/Tb | 0.54 | 0.31 | 0.35 | 0.58 |
21 | 44323590 | rs4148973 | NDUFV3 | C/T | 0.65 | 0.33 | 0.38 | 0.73 |
22 | 21141300 | rs4675 | SERPIND1 | A/C | 0.46 | 0.62 | 0.51 | 0.57 |