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Table 3 Predicted biological functions from Ingenuity Pathways Analysis

From: Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines

 

P-value

Number of genes

Genes

Diseases and disorders

   

   Neurological disease

1.38E-03 to 1.89E-02

8

UCHL1,ATF3,NDP,TUBB2C,KIF1B,TUBB2A,MST1,BCL2

   Inflammatory disease

2.51E-03 to 2.11E-02

16

IL6ST,ADM,TUBB2C,IL32,PIK3R1,TUBB2A,EIF1,ALOX5AP,MMP10,DUSP2,BCL2,GNAI2,HSPA8,FUT8,LDLR,AHNAK

   Skeletal and muscular disorders

2.71E-03 to 1.89E-02

16

IL6ST,ADM,COL6A2,TUBB2C,IL32,TUBB2A,ALOX5AP,MMP10,LARGE,DUSP2,BCL2,GNAI2,HSPA8,CEP290,BMI1,AHNAK

Molecular and cellular functions

   

   Lipid metabolism

1.19E-04 to 2.51E-02

13

ADM,IL6ST,ABCG5,ABHD5,IL32,PIK3R1,ALOX5AP,BCL2,GNAI2,IFRD1,LDLR,PRKAR2B,PITPNC1

   Molecular transport

1.19E-04 to 2.51E-02

12

IL6ST,IFRD1,HSPA8,GNAI2,ABHD5,ABCG5,LDLR,PIK3R1,IL32,PITPNC1,ALOX5AP,BCL2

   Small molecule biochemistry

1.19E-04 to 2.51E-02

17

IL6ST,ADM,AMPD3,ABCG5,ABHD5,PIK3R1,ASS1,IL32,ALOX5AP,BCL2,IFRD1,GNAI2,BCAT1,LDLR,PITPNC1,GOT1,GLDC

   Cellular development

1.32E-04 to 2.42E-02

13

IL6ST,ATF3,PIK3R1,ID3,BCL2,IGLL1,IFRD1,ELF3,BMI1,PRKAR2B,PLK2,LAMA1,PLAC8

   Cell death

2.36E-04 to 1.89E-02

14

IL6ST,ADM,ATF3,DDIT4,PIK3R1,NCK1,PSIP1,SH3BP5,ID3,BCL2,PRKAR2B,BMI1,PLK2,PLAC8

Canonical pathways

   

   Nitric oxide signaling

1.07E-02

3/90

CACNA1E,PRKAR2B,PIK3R1

   VEGF signaling

1.47E-02

3/92

PIK3R1,EIF1,BCL2

   Amyotrophic lateral sclerosis signaling

1.88E-02

3/108

CACNA1E,PIK3R1,BCL2

Toxicity list

   

   Hormone receptor regulated cholesterol metabolism

4.96E-02

1/8

LDLR

  1. IPA of significant disorders, molecular and cellular functions, canonical pathways, and toxicity genes that are strongly associated with 94 differentially expressed potential target genes of the miRNAs (log2 ratio ≥± 0.4). The Fisher's exact P-values and the number of genes for each top biological function are listed. VEGF, vascular endothelial growth factor.